etal/cnvkit — pull request #2 by chapmanb (2014-11-09 19:18:04+00:00)
Title: Provide ability to pass an R libpath when supporting libraries are not located in standard R paths

Eric;
This is another bcbio integration request. We put the R libraries in non-standard paths so folks can install without needing sudo permissions. This pull request adds a `--rlibpath` option which will set the given path as the libPath to load libraries. Without the option specified it has the same behavior as previously. Thanks much