samtools/htsjdk — pull request #132 by yfarjoun (2014-11-05 15:57:43+00:00)
Title: VCFFileReader added functionality to .fromVCF

Added functionality so that fromVCF can create an intervalList with or without filtered variants (defaulting to without, as currently)
Added functionality to fromVCF so that the intervals will end at the END value from the info field (if available).