chapmanb/bcbio-nextgen — pull request #655 by lpantano (2014-10-29 21:00:29+00:00)
Title: add paired fastq files support and some extra docs

modified `merge` function to be able to handle the ouput of `combine_pairs` function. It will merge first read file and second read file separately. Also adapted the new CSV file to be compatible with `bcbio_nextgen.py -w template`.