wtsi-npg/p4 — pull request #42 by dozy (2014-10-14 15:46:25+00:00)
Title: merge from devel for release 0.08

Production changes:
1. viv.pl - added checking of input/output connections between nodes, enforcing IN and OUT naming conventions for "ports"
2. vtfp-.pl - now allows an incoming edge/data source to be connected to multiple targets in a subgraph (VTLIB node) [note: static data only, not yet for streamed data]
3. update of current bwa_mem and tophat2 templates to contain fixmate, adddupmarksupport, and upgrade to bamstreamingmarkduplicates; also addition of calibration_pu to produce error files for QC