hammerlab/guacamole — pull request #191 by arahuja (2014-10-10 13:54:26+00:00)
Title: Compute dynamic read depth limits

This builds on #189

Here were use the `windowFoldLoci` to sum up aggregate statistics on the read (average depth, average insert size) Later I want to change these to be more complete distributions (so we can computer std dev, percentiles).

There is a new command line option `-approx-depth-limits` which estimates the max and min read depths using the sample statistics.