pysam-developers/pysam — pull request #46 by andreaswilm (2014-10-03 06:33:09+00:00)
Title: Added new read property: is_supplementary (sam flag 0x800)

Added new read property: is_supplementary (sam flag 0x800). From the SAM spec: "Bit 0x800 indicates that the corresponding alignment line is part of a chimeric alignment. A line flagged with 0x800 is called as a supplementary line."