ggloor/ALDEx2 — pull request #2 by ruthgrace (2014-08-28 17:47:07+00:00)
Title: Implemented Bioconductor suggestions

Changed version number to 0.99.2.

Implemented the following changes (this text is also in the NEWS document):

CHANGES IN VERSION 0.99.2
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NEW FEATURES

o made aldex.clr into a class

o allowed input of SummarizedExperiment object instead of a reads data frame

o prioritized use of the BiocParallel package for multicore processing. If BiocParallel is not installed then the parallel package used, if neither packages are installed, then serial processing is used