bigdatagenomics/avocado — pull request #102 by fnothaft (2014-08-27 23:35:39+00:00)
Title: [avocado-98] Add somatic genotyper

Closes #98 by adding a simple somatic genotyper. This uses the biallelic genotyping model to call variants in the normal sample, and then uses a VarScan style approach to call somatic variants. This is a pretty rough approach and will need further refinement.

CC'ing @tdanford for review.