al2na/genomation — pull request #71 by ttriche (2014-08-23 00:57:47+00:00)
Title: fix some bugs affecting bioc-devel versions

the examples now run properly on a devel install

R> packageVersion('genomation')
[1] '0.99.0.3'

R> biocVersion()
[1] '3.0'

R> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel grid stats graphics grDevices datasets utils
[8] methods base

other attached packages:
[1] genomation_0.99.0.3 GenomicAlignments_1.1.25 Rsamtools_1.17.33
[4] Biostrings_2.33.13 XVector_0.5.7 GenomicRanges_1.17.35
[7] GenomeInfoDb_1.1.18 IRanges_1.99.24 S4Vectors_0.1.2
[10] BiocGenerics_0.11.4 BiocInstaller_1.15.5 bigrquery_0.1
[13] gtools_3.4.1 dplyr_0.2

loaded via a namespace (and not attached):
[1] assertthat_0.1 BatchJobs_1.3 BBmisc_1.7
[4] BiocParallel_0.99.13 bitops_1.0-6 brew_1.0-6
[7] checkmate_1.3 codetools_0.2-9 colorspace_1.2-4
[10] data.table_1.9.2 DBI_0.2-7 digest_0.6.4
[13] fail_1.2 foreach_1.4.2 ggplot2_1.0.0
[16] gridBase_0.4-7 gtable_0.1.2 httr_0.4
[19] impute_1.39.0 iterators_1.0.7 jsonlite_0.9.10
[22] MASS_7.3-34 munsell_0.4.2 plyr_1.8.1
[25] proto_0.3-10 Rcpp_0.11.2 RCurl_1.95-4.3
[28] reshape2_1.4 RSQLite_0.11.4 rtracklayer_1.25.13
[31] scales_0.2.4 sendmailR_1.1-2 stats4_3.1.0
[34] stringr_0.6.2 tools_3.1.0 XML_3.98-1.1
[37] zlibbioc_1.11.1