biojava/biojava — pull request #152 by sbliven (2014-08-22 13:27:46+00:00)
Title: CE-CP 1.4

This version adds a parameter, DuplicationHint, which controls which structure gets internally duplicated. By default the shorter structure is duplicated, which improves performance slightly and can better handle large terminal insertions.

This also adds a runCECP.sh script to the protein comparison tool module.