Blahah/transrate — pull request #83 by MatthewRalston (2014-08-14 12:56:01+00:00)
Title: Genome

This feature allows the alignment of the assembled transcripts to the genome, reporting basic statistics like the number of transcripts aligned, and the average percent identity of these alignments. Unaligned transcripts (potential misassemblies or contaminants) are printed to a fasta file for further analysis. This feature is designed as a quality control step to show that the assembled transcripts have almost perfect sequence identity to the genome and that all assembled transcripts do align to the genome, verifying the assembly process.