tesseradata/datadr — pull request #34 by schloerke (2014-08-03 04:41:17+00:00)
Title: Updated R CMD check... almost there

Current Output

```
> check()
Updating datadr documentation
Loading datadr
'/usr/local/Cellar/r/3.1.1/R.framework/Resources/bin/R' --vanilla CMD build \
'/Users/barret/Dropbox/school/research/git/datadr/datadr' --no-manual \
--no-resave-data

* checking for file '/Users/barret/Dropbox/school/research/git/datadr/datadr/DESCRIPTION' ... OK
* preparing 'datadr':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'datadr_0.7.3.tar.gz'

'/usr/local/Cellar/r/3.1.1/R.framework/Resources/bin/R' --vanilla CMD check \
'/var/folders/b_/p70ksf2n01n6bjj3zs47s8rc0000gn/T//Rtmp5nTcJc/datadr_0.7.3.tar.gz' \
--timings

* using log directory '/private/var/folders/b_/p70ksf2n01n6bjj3zs47s8rc0000gn/T/Rtmp5nTcJc/datadr.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin14.0.0 (64-bit)
* using session charset: ASCII
* checking for file 'datadr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'datadr' version '0.7.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'datadr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... WARNING
Rhipe: HADOOP_BIN is missing, using $HADOOP/bin
HADOOP_HOME missing
HADOOP_CONF_DIR missing, you are probably going to have a problem running RHIPE.
HADOOP_CONF_DIR should be the location of the directory that contains the configuration files
'library' or 'require' calls not declared from:
'data.table' 'digest'
Unexported object imported by a ':::' call: 'Rhipe:::mkdHDFSTempFolder'
See the note in ?`:::` about the use of this operator.
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
LDcollect: no visible binding for '<<-' assignment to 'taskCounter'
LDcollect: no visible binding for '<<-' assignment to 'taskRes'
LDflushKV: no visible binding for '<<-' assignment to 'taskRes'
LDflushKV: no visible binding for '<<-' assignment to 'taskCounter'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running 'testthat.R' [31s/31s]
[31s/31s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
'/private/var/folders/b_/p70ksf2n01n6bjj3zs47s8rc0000gn/T/Rtmp5nTcJc/datadr.Rcheck/00check.log'
for details.

>
```
all warnings of `$HADOOP` stuff is my personal setup for Rhipe.

Currently, there are two open issues on the last two things to fix.

```
'require' calls not declared from:
'data.table' 'digest'
```

and

```
no visible binding for '<<-' assignment
```

Yay

- Barret

p.s. good luck on installing for travis

## on mac...
brew install maven
brew install protobuf241
brew install ant

g clone https://github.com/amplab-extras/SparkR-pkg.git
cd SparkR-pkg/
USE_MAVEN=1 ./install-dev.sh # typical install with ant failed for me. :-(

download and open http://ml.stat.purdue.edu/rhipebin/Rhipe_0.73.1-4.tar.gz
R CMD install Rhipe