biocore/scikit-bio — pull request #560 by laurentluce (2014-08-02 20:55:45+00:00)
Title: Support for QSEQ parsing.

This relates to issue #389. @audy, @wasade.

Added parse_qseq, QseqIterator, support in the factory for .qseq and .qseq.gz. Added unit tests.

For Sequence ID, I am using: _::::#/. Example: CRESSIA_242:1:2204:1453:1918#0/1. Do you agree?

I set qual_id to seq_id. Do you agree?

One of the QSEQ record attribute is "filter". I used "filter_" in the namedtuple "Record", what's your recommendation on name clashing?