hammerlab/immuno — pull request #112 by iskandr (2014-07-24 22:39:36+00:00)
Title: Immunogenicity ligandome

Instead of trying to model the space of immunogenic epitope strings directly, instead let's model immunogenicity by only keeping track of which patterns *can't* be recognized by T-cells. These are epitopes which overlap with the set of "self" peptides used for negative selection in the thymus.