psudmant/RD_pipelines — pull request #1 by bnelsj (2014-07-21 17:24:30+00:00)
Title: Fixed TEST_CALL_FILTER bugs in dCGH Snakefile

- Created separate variable for TEST_CONTIGS, which means rule dCGH runs on ALL_CONTIGS by default instead of just the contigs being tested
- Added rule test_call_filter which allows snakemake to recognize wildcards in rule genotype_refine_breakpoints_by_chr_subset
- Removed input requirements in rule clean_call_filter_test