choderalab/yank — pull request #62 by jchodera (2014-06-28 21:10:46+00:00)
Title: Modifications to fix SystemBuilder -> AbsoluteAlchemicalFactor interactions [WIP]

This PR will make changes to `systembuilder.py` and `alchemy.py`, as well as add additional nosetests.

Still in progress. Hold off on other changes to these files right now.