pcingola/SnpEff — pull request #35 by chapmanb (2014-06-24 17:13:22+00:00)
Title: Fix snpEff wrapper to correctly handle -canon and -cancer inputs.

Pablo;
Sorry about the `-c` bug in the wrapper script. This is a fix via @mjafin that avoids the issue with `-c` detection overlapping with `-canon` and `-cancer` arguments. Thanks much.

chapmanb/bcbio-nextgen#441