psudmant/stream_read_pair — pull request #2 by bnelsj (2014-06-18 23:18:59+00:00)
Title: Output 100 pairs per position

Changed subsample_reads method to output 100 pairs for each random position. This fixes a bias in insert size calculation. In addition, added a filter to make sure reads are a proper pair, not pcr dups, and not a qcfail.