broadgsa/gatk-protected — pull request #8 by cjav (2014-06-18 19:24:49+00:00)
Title: Switches default value for outputRoot in SplitSamFile to an empty string instead of null.

Currently if outputRoot is not provided individual BAM files are named like this:
nullSAMPLE1.bam
nullSAMPLE2.bam