broadgsa/gatk-protected — pull request #7 by cjav (2014-06-17 17:34:23+00:00)
Title: Switches 'level' value to an extension argument for CalculateHsMetrics

Made 'level' in Picard's CalculateHsMetrics Scala Queue extension an argument. Left 'net.sf.picard.analysis.MetricAccumulationLevel.SAMPLE' as default value.