lh3/bwa — pull request #26 by nsoranzo (2014-06-13 13:57:50+00:00)
Title: Clarify documentation of bwa mem -M

References:
- https://www.biostars.org/p/97323/
- http://sourceforge.net/p/samtools/mailman/message/31227887/ for the Picard version in which support for 'supplementary alignment' flag was introduced.