opencobra/cobrapy — pull request #91 by aebrahim (2014-05-21 14:33:40+00:00)
Title: Version 0.3 changes

These are the major changes to cobrapy for the v0.3. This release should include:
- [x] faster solver interface for pyglpk, gurobi, and cplex
- [x] using the faster solver interface for fva and single/double deletions
- [x] cython-based glpk solver
- [x] more flux analysis tools: pFBA and phenotypic phase planes
- [ ] improved documentation
- [ ] expanded unit test coverage
- [ ] sbml fbc support
- [x] improvements to ArrayBasedModel
- [x] Simplify API: access read-only attributes
- [ ] integration with zakandrewking/escher@2e4c012
- [x] simplified installation
- [ ] code cleanup