bigdatagenomics/avocado — pull request #72 by fnothaft (2014-05-16 03:48:48+00:00)
Title: Adding code to align reads with SNAP.

This adds code as an input stage that will launch SNAP and do streaming read alignment. This also updates avocado to the 0.10.1-SNAPSHOT build of ADAM.

I'm opening #73 as an issue to generalize this code for other aligners.