SimTk/pdbfixer — pull request #39 by kyleabeauchamp (2014-05-14 19:03:47+00:00)
Title: Added applyMutations and tests.

Driver code:

```
import simtk.openmm.app as app
import pdbfixer

fixer = pdbfixer.PDBFixer(pdbid='1VII')
fixer.applyMutations(["ALA-16-GLY"])
app.PDBFile.writeFile(fixer.topology, fixer.positions, open("./out.pdb", 'w'))
```

To run the tests, type

```
nosetests tests/test_mutate.py
```