richardmleggett/nextclip — pull request #6 by bunbun (2014-05-08 14:12:58+00:00)
Title: Add support for pre-Casava 1.8 illumina headers

I would like to add support for older fastq ```@``` lines
http://en.wikipedia.org/wiki/FASTQ_format#Illumina_sequence_identifiers

Before Casava 1.8, the nth member of a pair-end or mate pair read was encoded following a slash: e.g.

@HWUSI-EAS100R:6:73:941:1973#0/1

After Casava 1.8, this follows a space, e.g.

@EAS139:136:FC706VJ:2:2104:15343:197393 1:Y:18:ATCACG