bigdatagenomics/avocado — pull request #65 by fnothaft (2014-05-08 15:40:08+00:00)
Title: Fix spur removal

This pull request adds a new spur removal algorithm which iteratively removes kmers that have no predecessor/successor and that are not the source or sink of the graph. Additionally, we add test code for this feature, and make running spur removal the default choice during assembly.