bioperl/bioperl-live — pull request #67 by stu2 (2014-05-06 11:15:22+00:00)
Title: Optimized speed of spliced_seq for local

Avoid calling $called_seq->seq() for each exon individually if they are
from the same (locally held) sequence, which they usually are.

13 X faster for processing human chromosome 3. But should handle remote
sequences or Bio::Das::SegmentI sequences same as before.