arq5x/bedtools2 — pull request #63 by lindenb (2014-04-22 09:32:21+00:00)
Title: support for operators 'X' and '=' in method BlockedIntervals.cpp/GetBamB...

used bamToBed with a bam containing cigar-operators 'X' and '='. The method `GetBamBlocks` in BlockedIntervals.cpp doesn't support those operators.