uci-cbcl/genomix — pull request #147 by jakebiesinger (2014-04-21 17:00:50+00:00)
Title: Wbiesing/bubble search

@Elmira88
Adds bubblesearch, which looks at all possible bubbles and does as aggressive a pruning as is possible(!), though we only remove the outgoing edge towards the bubble path. Perhaps we should remove the whole bubble path? Not sure...