OpenMS/OpenMS — pull request #801 by cbielow (2014-04-16 12:17:57+00:00)
Title: RTPredict: fixed order of parameters and doc

new interface gives 'svm_model' and 'total_gradient_time' in one block with other input options, and not below the output block (which tends to confuse people at lot).
After this fix:

Usage:
RTPredict

Options (mandatory options marked with '*'):
-in_id Peptides with precursor information (valid formats: 'idXML')
-in_text Peptides as text-based file (valid formats: 'txt')
-svm_model * Svm model in libsvm format (can be produced by RTModel) (valid formats: 'txt')
-total_gradient_time The time (in seconds) of the gradient (peptide RT prediction) (default: '1' min: '1e-005')

Output files in idXML format:
...