sanger-pathogens/Bio-RNASeq — pull request #14 by js21 (2014-04-10 11:23:14+00:00)
Title: All tests for all protocols and total mapped read methods implemented.

Also, changes to the standalone rna_seq_expression script. 'nc_protocol' string was not handled by the code, instead, 'strand_specific_protocol' was in place. Made changes to the code and argument to be passed to the flag -p should now be strand_specific.
Added the feature type field and the value is now being pulled and printed to the expression csv files.