SciLifeLab/facs — pull request #125 by guillermo-carrasco (2014-04-02 12:48:57+00:00)
Title: Build Bowtie2 indexes

* Build bowtieX and BWA indexes if not downloadable
* Remove hardcoded paths and merge fastq_screen tests as now the code is the same for both bowtie and bowtie2
* Add bowtie version in the document sent to couchDB