manics/omero-pychrm — pull request #30 by manics (2014-03-24 20:40:07+00:00)
Title: Cross validation script

Adds a cross-validation script, based on https://github.com/wnd-charm/wnd-charm/blob/master/examples/classifier_cross_validation.py, see #18.

Requires wnd-charm/wnd-charm#26

Note the cross validation script is curently broken:
```
In [17]: e.PredictedValueAnalysis()
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
in ()
----> 1 e.PredictedValueAnalysis()

/Users/simon/omero-test/venv/lib/python2.7/site-packages/pychrm-0.2-py2.7-macosx-10.8-x86_64.egg/pychrm/FeatureSet.pyc in print_method_wrapper(*args, **kwargs)
201 sys.stdout = backup
202 else:
--> 203 retval = method_that_prints_output( *args, **kwargs )
204 return retval
205

/Users/simon/omero-test/venv/lib/python2.7/site-packages/pychrm-0.2-py2.7-macosx-10.8-x86_64.egg/pychrm/FeatureSet.pyc in PredictedValueAnalysis(self)
4062 vals = np.array( [result.predicted_value for result in self.accumulated_individual_results[filename] ])
4063 self.ground_truth_values.append( self.accumulated_individual_results[filename][0].ground_truth_value )
-> 4064 self.predicted_values.append( np.mean(vals) )
4065 self.individual_stats[filename] = ( len(vals), np.min(vals), np.mean(vals), \
4066 np.max(vals), np.std(vals) )

/usr/local/lib/python2.7/site-packages/numpy/core/fromnumeric.pyc in mean(a, axis, dtype, out, keepdims)
2486
2487 return _methods._mean(a, axis=axis, dtype=dtype,
-> 2488 out=out, keepdims=keepdims)
2489
2490

/usr/local/lib/python2.7/site-packages/numpy/core/_methods.pyc in _mean(a, axis, dtype, out, keepdims)
55 out=ret, casting='unsafe', subok=False)
56 else:
---> 57 ret = ret / float(rcount)
58 return ret
59

TypeError: unsupported operand type(s) for /: 'NoneType' and 'float'
```