bigdatagenomics/adam — pull request #185 by fnothaft (2014-03-19 18:58:42+00:00)
Title: Indel unittest cleanup

This commit cleans up the unit tests for the indel realigner. In the process of cleaning these tests up, I removed dead code to support legacy target generation (via ADAMRecord/Pileup, instead of RichADAMRecord). All unit tests should pass now.

This pull request depends on #181, #182, #183.