hammerlab/immuno — pull request #15 by iskandr (2014-03-20 01:35:28+00:00)
Title: added peptide_length for commandline protein strings

For protein strings given as a commandline argument you can now specify "--peptide_length" for how long the vaccine peptides will be. Not yet implemented: aggregation at the end of the pipeline (grouping by peptides), switch the currently misnamed Epitope and Peptide columns, use peptide_length argument for input files.