chapmanb/bcbio-nextgen — pull request #349 by lbeltrame (2014-03-13 08:45:17+00:00)
Title: Miscellaneous fixes for FreeBayes

This follows up the investigation by @mjafin on issue #314. The -s call is removed (too stringent) and the pvar option too, letting filtering be handled by hard filters, like germline calling.