wtsi-npg/genotyping — pull request #221 by keithj (2014-03-03 10:09:00+00:00)
Title: Revised the SNP database query for Sequenom

Added switch to ready_infinium.pl to allow Fluidgm QC data to be selected.

Revised the SNP database query for Sequenom to ignore SNP mapping
positions (there are sometimes multiple positions).

Added cross-check of Sequenom results against the SNP manifest
(multiplex composition does not always agree with data in SNP).