chapmanb/bcbio-nextgen — pull request #318 by mjafin (2014-02-27 09:13:54+00:00)
Title: Fixed disambiguation for STAR alignments

Hi Rory,
Seeing that the BAM/SAM file handling changed and the nM tag is no longer transformed into NM, I've modified the disambiguation code to handle the tag more graciously for STAR alignments. I hope this fix makes it to 0.7.7!