chapmanb/bcbio-nextgen — pull request #310 by lbeltrame (2014-02-13 16:40:41+00:00)
Title: Add --strand-filter 1 to VarScan somatic options

This is done in order to filter variants with extremely high (>90%) strand bias. I've noticed these in my outputs and I'd rather keep them out of the way (as they could be errors).