chapmanb/bcbio-nextgen — pull request #302 by mjafin (2014-02-11 15:30:24+00:00)
Title: Disambiguation for RNA-STAR fixed: nM tag changed to NM

Hi Rory,
I'd implemented disambiguation for raw STAR output but I can see in the pipeline the alignment files go through additional steps prior to disambiguation, fixing STAR's 'nM' tag into the more appropriate 'NM'. This version uses 'NM'.