genome/somatic-sniper — pull request #2 by ckandoth (2014-02-07 04:14:48+00:00)
Title: Fixed allele-fraction, improved docs, support for generic VCFs

Note that only one output file will be created with the following columns:
#CHROM POS REF VAR DEPTH RAF VAF FILTER FILTER_DETAILS

The tags within the FILTER column can be back-filled into a VCF using vcf-annotate. The column FILTER_DETAILS is a friendlier explanation of why a variant was filtered.