ekg/vcflib — pull request #30 by tjjjohnson (2014-01-07 00:32:33+00:00)
Title: Fixed bug with vcfallelicprimitives handling of monomorphic reference mn...

...ps which are produced by some snp callers

e.g.

X 40 . GGG . 100 PASS LEN=1,2;TYPE=snp,complex GT 0|0 0|0 .

was being translated to this. Note the invalid alternate allele field.

X 40 . GGG .GG,. 100 PASS LEN=1,2;TYPE=snp,complex GT 0|0 0|0 .