biojava/biojava — pull request #87 by pwrose (2013-12-17 20:10:27+00:00)
Title: if params.setParseCAOnly(true) and params.setCreateAtomBonds(true) are

set, some bonds specified in LINK records or SSBOND records cannot be
set (atoms are not there). In these cases StructureException should not
be thrown.