bigdatagenomics/adam — pull request #31 by fnothaft (2013-12-13 19:44:08+00:00)
Title: Fixing a few issues in the ADAM2VCF2ADAM pipeline.

Fixed a few issues:

* Adam2VCF and VCF2Adam were not included in AdamMain.
* A few processes in the GenotypesToVariant converter had possibly empty reductions, which could cause runtime exceptions.
* Set additional required fields for the Hadoop-BAM VCFOutputFormat in Adam2VCF.