uci-cbcl/genomix — pull request #94 by jakebiesinger (2013-12-08 01:33:47+00:00)
Title: Wbiesing/fix tests

WIP to get all the travis test cases passing

- [ ] One test case fails but doesn't result in a nonzero exit code (see end of https://s3.amazonaws.com/archive.travis-ci.org/jobs/15107105/log.txt).
- [ ] Need to fix fastq input format (zip it together into a readid file when uploading to HDFS?)
- [ ] Need to regenerate the expected outputs and **check to make sure they're correct**. @anbangx do you want to handle this?