sanger-pathogens/PathFind — pull request #15 by carlacummins (2013-12-03 17:41:52+00:00)
Title: Updates and bug fixes

- Index files now symlinked for vcf and bam (.tbi and .bai)
- Symlinks now contain lane ID
- Pseudogenome creation bug fixed
- Additional checks for reference when creating pseudogenome
- Handles ambiguous reference names for ps_genome