qiime/qiime — pull request #1216 by mikerobeson (2013-11-25 15:20:52+00:00)
Title: Join paired ends

PR for joining paired-ends. Even though I am still cleaning up the code, I figure it is short and simple enough to start getting feedback.

Code located here:
https://github.com/mikerobeson/qiime/blob/join_paired_ends/scripts/join_paired_ends.py
https://github.com/mikerobeson/qiime/blob/join_paired_ends/qiime/join_paired_ends.py

Top of my to do list:
1) Check for correct combination of parameters. That is, inform user that a parameter for 'SeqPrep' will not be used if the paired-end joining method is 'fastq-join', and vice versa.
2) Set up tests and test files.