qiime/American-Gut — pull request #44 by JWDebelius (2013-11-22 22:38:38+00:00)
Title: Formatting updates

NOT READY FOR MERGE!!!

This beings to implement some of the changes required for use in Qiime. … Note that this requires installation of Colorbrewer to run properly.

New features:
- Pie chart code to create summary plot for AGP.
- Translation of color brewer colormaps for running with matplotlib
- Updated code to for identifying the most common categories (rather than simply hard coding)
- Updated version of summarizing the categories.
- Added barcodes to generate_otu_table_AGP's macro.

Things that need to happen before the merge:
- Load and summarize category files without error
- Update bar chart code to be more dynamic
- Add date and time to latex macro.