genome/pindel — pull request #1 by marghoob (2013-10-28 08:25:36+00:00)
Title: Optimized

This will need some thorough testing before it can be merged to master--I see small differences in the close-end map counts in the logs, but the far-end checksums match. Also, make sure that the platform being used is an Intel machine with SSE 4.2 support and atleast 20 GB of RAM (since the index for whole-genome is around 15 GB).