juliema/TRAM — pull request #28 by daisieh (2013-10-25 03:06:12+00:00)
Title: Partial feature implementation

I am setting up the framework to be able to see which parts of the target sequence are hitting per contig. The main difference you'll see now is that the end of the run outputs a tab-delimited table (that you can catch if you pipe the output of sTRAM.pl into a file) showing which target sequences had blast scores of over 100 for each contig.