terabyte/atlassian-cli — pull request #1 by newren (2013-09-14 00:17:44+00:00)
Title: Feature/cookie support

This provides an ability to read credentials from stdin. It also has a patch to mention ~/.atlas-cli-rc in lieu of ~/.netrc, which I'm not sure if it's what you want, but at least mentions the alternate location that you pointed me at.