sanger-pathogens/Bio-VertRes-Config — pull request #46 by CraigPorter (2013-09-11 10:57:13+00:00)
Title: bacteria snp-calling with smalt defaults to --smalt_mapper_r -1

Bacteria SNP-Calling with smalt defaults to smalt mapping parameter -r -1. Reads with multiple best matches are set to unmatched.

Do not merge this request until researchers informed.