SciLifeLab/bcbio-nextgen — pull request #10 by vezzi (2013-09-10 08:45:18+00:00)
Title: QCpipeline on fastq files:

not yet working, still needed to consider paired read support and output handling

@mario:
this is the starting point to create the QC pipeline, I have not yet figure out how to generate QC reports directly in the pipeline but it should be not difficult (probably some customization is needed).
The paired end support is still lacking, for now I process only the first pair.