Gurado/ngsane — pull request #23 by noncodo (2013-08-23 02:10:26+00:00)
Title: basic Trinity package

This fork now implements Trinity de-novo RNAseq without a reference genome.
The trinity pipeline is split into 3 sub-components, optimising server resources for the individual components.
NOTE: has not been tested on a PBS system yet.
TO DO:
-working on generating compatible html output with basic assembly stats
-implementing standard upstream and downstream analyses: e.g. fastq digitial normalisation, quantification with RSEM, differential expression, etc...