juliema/TRAM — pull request #2 by daisieh (2013-08-21 00:36:02+00:00)
Title: Updated pull request: sorting shell script

Shell script to sort a fasta file, required for many steps in the pipeline.

I wrote a one-liner similar to the one you found earlier that will take the fasta file you generate after finding the paired end and sort it into alternating pairs. I wrapped it in as a shell script but obviously you could pull out the line and use it anywhere you want.